Fluorescence microscopy is a major driver of scientific progress in the life sciences. Although high-end confocal microscopes are capable of filtering out-of-focus light, cheaper and more accessible microscopy modalities, such as widefield microscopy, can not, which consequently leads to hazy image data. Computational dehazing is trying to combine the best of both worlds, leading to cheap microscopy but crisp-looking images. The perception-distortion trade-off tells us that we can optimize either for data fidelity, e.g. low MSE or high PSNR, or for data realism, measured by perceptual metrics such as LPIPS or FID. Existing methods either prioritize fidelity at the expense of realism, or produce perceptually convincing results that lack quantitative accuracy. In this work, we propose HazeMatching, a novel iterative method for dehazing light microscopy images, which effectively balances these objectives. Our goal was to find a balanced trade-off between the fidelity of the dehazing results and the realism of individual predictions (samples). We achieve this by adapting the conditional flow matching framework by guiding the generative process with a hazy observation in the conditional velocity field. We evaluate HazeMatching on 5 datasets, covering both synthetic and real data, assessing both distortion and perceptual quality. Our method is compared against 11 baselines, achieving a consistent balance between fidelity and realism on average. Additionally, with calibration analysis, we show that HazeMatching produces well-calibrated predictions. Note that our method does not need an explicit degradation operator to exist, making it easily applicable on real microscopy data. All data used for training and evaluation and our code will be publicly available under a permissive license.

Learning to infer the conditional posterior model is a key step for robust meta-learning. This paper presents a new Bayesian meta-learning approach called Neural Variational Dropout Processes (NVDPs). NVDPs model the conditional posterior distribution based on a task-specific dropout; a low-rank product of Bernoulli experts meta-model is utilized for a memory-efficient mapping of dropout rates from a few observed contexts. It allows for a quick reconfiguration of a globally learned and shared neural network for new tasks in multi-task few-shot learning. In addition, NVDPs utilize a novel prior conditioned on the whole task data to optimize the conditional \textit{dropout} posterior in the amortized variational inference. Surprisingly, this enables the robust approximation of task-specific dropout rates that can deal with a wide range of functional ambiguities and uncertainties. We compared the proposed method with other meta-learning approaches in the few-shot learning tasks such as 1D stochastic regression, image inpainting, and classification. The results show the excellent performance of NVDPs.

In this section, we provide the derivations of the equations provided in section 2.

We present a deep learning framework for correcting existing dynamical system models utilizing only a scarce high-fidelity data set. In many practical situations, one has a low-fidelity model that can capture the dynamics reasonably well but lacks high resolution, due to the inherent limitation of the model and the complexity of the underlying physics. When high resolution data become available, it is natural to seek model correction to improve the resolution of the model predictions. We focus on the case when the amount of high-fidelity data is so small that most of the existing data driven modeling methods cannot be applied. In this paper, we address these challenges with a model-correction method which only requires a scarce high-fidelity data set. Our method first seeks a deep neural network (DNN) model to approximate the existing low-fidelity model. By using the scarce high-fidelity data, the method then corrects the DNN model via transfer learning (TL). After TL, an improved DNN model with high prediction accuracy to the underlying dynamics is obtained. One distinct feature of the propose method is that it does not assume a specific form of the model correction terms. Instead, it offers an inherent correction to the low-fidelity model via TL. A set of numerical examples are presented to demonstrate the effectiveness of the proposed method.

In this work we develop efficient methods for learning random MAP predictors for structured label problems. In particular, we construct posterior distributions over perturbations that can be adjusted via stochastic gradient methods. We show that any smooth posterior distribution would suffice to define a smooth PAC-Bayesian risk bound suitable for gradient methods. In addition, we relate the posterior distributions to computational properties of the MAP predictors. We suggest multiplicative posteriors to learn super-modular potential functions that accompany specialized MAP predictors such as graph-cuts. We also describe label-augmented posterior models that can use efficient MAP approximations, such as those arising from linear program relaxations.

Latent variable modeling in non-autoregressive neural machine translation (NAT) is a promising approach to mitigate the multimodality problem. In the previous works, they added an auxiliary model to estimate the posterior distribution of the latent variable conditioned on the source and target sentences. However, it causes several disadvantages, such as redundant information extraction in the latent variable, increasing parameters, and a tendency to ignore a part of the information from the inputs. In this paper, we propose a new latent variable modeling that is based on a dual reconstruction perspective and an advanced hierarchical latent modeling approach. Our proposed method, {\em LadderNMT}, shares a latent space across both languages so that it hypothetically alleviates or solves the above disadvantages. Experimental results quantitatively and qualitatively demonstrate that our proposed latent variable modeling learns an advantageous latent space and significantly improves translation quality in WMT translation tasks.

We propose a novel approach to perform approximate Bayesian inference in complex models such as Bayesian neural networks. The approach is more scalable to large data than Markov Chain Monte Carlo, it embraces more expressive models than Variational Inference, and it does not rely on adversarial training (or density ratio estimation). We adopt the recent approach of constructing two models: (1) a primary model, tasked with performing regression or classification; and (2) a secondary, expressive (e.g. implicit) model that defines an approximate posterior distribution over the parameters of the primary model. However, we optimise the parameters of the posterior model via gradient descent according to a Monte Carlo estimate of the posterior predictive distribution -- which is our only approximation (other than the posterior model). Only a likelihood needs to be specified, which can take various forms such as loss functions and synthetic likelihoods, thus providing a form of a likelihood-free approach. Furthermore, we formulate the approach such that the posterior samples can either be independent of, or conditionally dependent upon the inputs to the primary model. The latter approach is shown to be capable of increasing the apparent complexity of the primary model. We see this being useful in applications such as surrogate and physics-based models. To promote how the Bayesian paradigm offers more than just uncertainty quantification, we demonstrate: uncertainty quantification, multi-modality, as well as an application with a recent deep forecasting neural network architecture.

We introduce the sequential neural posterior and likelihood approximation (SNPLA) algorithm. SNPLA is a normalizing flows-based algorithm for inference in implicit models. Thus, SNPLA is a simulation-based inference method that only requires simulations from a generative model. Compared to similar methods, the main advantage of SNPLA is that our method jointly learns both the posterior and the likelihood. SNPLA completely avoid Markov chain Monte Carlo sampling and correction-steps of the parameter proposal function that are introduced in similar methods, but that can be numerically unstable or restrictive. Over four experiments, we show that SNPLA performs competitively when utilizing the same number of model simulations as used in other methods, even though the inference problem for SNPLA is more complex due to the joint learning of posterior and likelihood function.